Standard Available Services
Whole Genome Sequencing
Variant Analysis
To identify genomic variants (SNP/indels) comparatively. Usually involves comparing to a reference, also for cross sample comparisons.
Small Genome De Novo Assembly
For small genomes (bacteria, small eukaryotes), we can build a new assembly. This process is generally more straightforward for small organisms.
Large Genome De Novo Assembly
For larger genomes (human, mouse, most plants), this process is generally more iterative to build a new assembly.
Transcriptome Sequencing
RNA-seq Analysis
To identify genes that are differentially expressed between conditions, and potentially identify perturbed biological pathways.
Single Cell RNA Analysis
RNA-seq analysis at single cell clarity. This generally involves the 10X Genomics workflow for library preparations.
scRNA with additional flavors
Additional 10X Genomics scRNA-seq modalities such as feature barcoding, hashtagging, and VDJ sequencing.
Epigenetic Sequencing
ATAC-seq
To identify the open chromatin (unbound from nucleosomes) regions between conditions
scATAC-seq
ATAC-seq at single cell clarity using 10X Genomics library preparations.
scMultiome
10X Genomics scATAC with additional modalities, such as multiome.
Methyl-seq
To identify differentially methylated regions between conditions.
ChIP-Seq
To identify differential transcription factor binding between conditions.
Cut&Run
To identify differential binding sites of DNA-associated proteins between conditions.
Metagenomics Sequencing
16s Metabarcoding
Amplicon based metabarcoding to identify present bacterial populations.
Short Read Shotgun Metagenomics
Whole genome metagenomics using short reads technologies (Illumina)
Long Read Shotgun Metagenomics
Whole genome metagenomics using long reads technology (Nanopore)
Long Reads 16s Metabarcoding
Amplicon based metabarcoding to identify present bacterial populations using long reads (ONT).
Custom Projects
Where magic requests happen
Projects that can be customized to multiple applications, such as Ampli-seq, VDJ sequencing, tool development etc.